Analysis
========

Once you’ve run your batch of mutations (e.g. via ``run_mutation_batch.py``), you’ll get:

- A CSV with columns: residue_number, original, mutated, category, chain, mutation, rmsd, com_shift.
- Plots showing how each mutation affects structure.

RMSD per Mutation
-----------------

.. image:: _static/mutation_rmsd.png
   :alt: Plot of RMSD for each mutation
   :align: center

Center‐of‐Mass Shift per Mutation
---------------------------------

.. image:: _static/mutation_com_shift.png
   :alt: Plot of centre‐of‐mass shifts
   :align: center

Interpretation
~~~~~~~~~~~~~~

- **High RMSD** indicates large backbone perturbations.
- **High COM shift** signals significant repositioning of the mutated residue.